Simple sequence repeat (SSR)
>UN61845 CTTATATATTTAGTTCATGAACAAATGCTACTCGGTTTTTTGAATCATAAAAATAGTCGGAACACATTTCAAAAAGGTTCACGGTTGCATAATT GGGTGTCGAGAATTTCTAAAATAGAAAGAAGCTTATGTTGATCCATGTATGTAGTAATAGATGTGTTGATTTATTCATCCATGCTTTGATCTAT ACTTGCAGCCACCAATGGTTTCTTGCGCATTGTCCAAAATGCTGAAAAATAGTGATTTTGCATCATCGATCGGGGATTCGTAGTATAAGTTGTT TCGATGGTCTTCTCGAGCTCCAACTCAAATCCATAATGGATTGCGATCCTCTTCACGTCTTCCAAACTTAACTCAACTGACATTTCATCTTCTT GACCATACATATCTGCAAAGTGATAAAGTAGGGGACCTAGGTTTATCCAAACTCCCCCGTCTTTAAGAATTTTTGAGATGATTTCAATGTATTC AACAATATTGTGGGCTGTATCAAGGAAGAAGCAGGTCACAACTGCATCCCACGCTCCTACTTGGGCCGGGTCGCCATACACTTCAACAAAGTCT CCACCACACATAGAAAATCCTTCCGTAATCCCTGCACTAGCAGGATGAATATCCGGAATGGAAACTGGACGAAGCTGATCAGCATCAGACAGTG AATTACAATTGCTGTGAATCCATGGATGAATAGTCCATTCCCCAATAGCTTGAGTCTGATTAAGAATAAAACTTGAGCAGATCATCATGTAGTA AGAGAATTCATTTCCTTGACTTTTGAAACCAAGACATGAAATTTCCAATGCCAGTCTTCCTAATCCAGCACCTGGAACTAGACAAGACGGAGGG CTATCTTCACTGCGATTAGGAAAATGGCGTTTCAGTTCTTCAAGAATAGGCTTATAACATTGGTCTCGTTCCTTCTGCCCCTCAGCAGCCCAGT CTCTGACAATATTCCTAATGACACATCGAACCTTATCAACATCCACTAAAGGAACATGGAAATGGGGCATTGAGTCTAATCTATCAGGAGATTC AGGAGGTACACATGAAATGTCCTTCTTGGGATCAGTGTCTGAATCAACACTGACATCTATAGCATTGTCACAGCCACCTTTATGAGTGTTTGTT TTGCATTCTAAGCCTTCGGGAAAGCTTCCAGACTCTGGCTCACAGCAATTTTCCTTTTTCTCCTCATGCCCACCACAAGCTTCGCTACATTGTG CAGAAGGAGCTCTTCCGCTTATTGAGACCGGTTCAGAACATGGATCCCTGTCTTCTGAGTGATGATGACCACATGAACCGTTATCCCCATGTTC ACACATTTCATCATCTTGACTCATATCAAAAGGGGGCTCAAACGCCTGTAGCATATCAAAAATGAAATTGGAATTTTTTGTGATACACCGTCTC AGTTTCTGATATTTTAAAGGAAGGTGTGCCACCAGAGCCTTGTGAGCCACTGGAAGCCTTCTGAAAGATCTCTCATATCTTCTCACATCCTCCT CTGCAGCTTCCGAATAGTTGATGTAGGCAGAGATGATGCGGCGAAGGGATTGGATTTCAAGGGATTCTTCGTACTTCTTCCGTCGAATAGCTTC ATCCTCAACTGCTGCTGCTGCTGACTTGTTGTTGTTGTTTGACATTTTTGTTTATGCTTGTATTGTCACTGTGTTTTTGTTTCTGTTTAGCGGC GAACCAACCAAACAACCAGCAAACAAAGCTTTATTATCTAATAACCAGTTGCTCAAGATGATGCGGA |
Primers for UN61845 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GGGATTGGATTTCAAGGGAT | 59.959 | 20 | GTTCGCCGCTAAACAGAAAC | 59.889 | 20 | 147 | 1550 | 1696 |
2 | AAGGGATTGGATTTCAAGGG | 60.124 | 20 | GTTCGCCGCTAAACAGAAAC | 59.889 | 20 | 149 | 1548 | 1696 |
3 | TCCGTCGAATAGCTTCATCC | 60.177 | 20 | GTTCGCCGCTAAACAGAAAC | 59.889 | 20 | 114 | 1583 | 1696 |