Simple sequence repeat (SSR)
| >UN61842 CACCACATAAAGTCGGACTTCATCAAGTCAAATCCCAGTCAATCTTGAACCACAAGGATAAAAAGCGGTGTAAGTCTACAGGATTGGAGTCTTC AAAAGACATGCCCAACCAAATAAATTTAAATCAACAATTATGAAAAGCACAAAAAAGATCGGTGTTCACGAGCCATCTAAAATAGAAAGAAGCT TATGTTGATCCATGTATGTAGTAATAGATGTGTTGATTTATTCATCCATGCTTTGATCTATACTTGCAGCCACCAATGGTTTCTTGCGCATTGT CCAAAATGCTGAAAAATAGTGATTTTGCATCATCGATCGGGGATTCGTAGTATAAGTTGTTTCGATGGTCTTCTCGAGCTCCAACTCAAATCCA TAATGGATTGCGATCCTCTTCACGTCTTCCAAACTTAACTCAACTGACATTTCATCTTCTTGACCATACATATCTGCAAAGTGATAAAGTAGGG GACCTAGGTTTATCCAAACTCCCCCGTCTTTAAGAATTTTTGAGATGATTTCAATGTATTCAACAATATTGTGGGCTGTATCAAGGAAGAAGCA GGTCACAACTGCATCCCACGCTCCTACTTGGGCCGGGTCGCCATACACTTCAACAAAGTCTCCACCACACATAGAAAATCCTTCCGTAATCCCT GCACTAGCAGGATGAATATCCGGAATGGAAACTGGACGAAGCTGATCAGCATCAGACAGTGAATTACAATTGCTGTGAATCCATGGATGAATAG TCCATTCCCCAATAGCTTGAGTCTGATTAAGAATAAAACTTGAGCAGATCATCATGTAGTAAGAGAATTCATTTCCTTGACTTTTGAAACCAAG ACATGAAATTTCCAATGCCAGTCTTCCTAATCCAGCACCTGGAACTAGACAAGACGGAGGGCTATCTTCACTGCGATTAGGAAAATGGCGTTTC AGTTCTTCAAGAATAGGCTTATAACATTGGTCTCGTTCCTTCTGCCCCTCAGCAGCCCAGTCTCTGACAATATTCCTAATGACACATCGAACCT TATCAACATCCACTAAAGGAACATGGAAATGGGGCATTGAGTCTAATCTATCAGGAGATTCAGGAGGTACACATGAAATGTCCTTCTTGGGATC AGTGTCTGAATCAACACTGACATCTATAGCATTGTCACAGCCACCTTTATGAGTGTTTGTTTTGCATTCTAAGCCTTCGGGAAAGCTTCCAGAC TCTGGCTCACAGCAATTTTCCTTTTTCTCCTCATGCCCACCACAAGCTTCGCTACATTGTGCAGAAGGAGCTCTTCCGCTTATTGAGACCGGTT CAGAACATGGATCCCTGTCTTCTGAGTGATGATGACCACATGAACCGTTATCCCCATGTTCACACATTTCATCATCTTGACTCATATCAAAAGG GGGCTCAAACGCCTGTAGCATATCAAAAATGAAATTGGAATTTTTTGTGATACACCGTCTCAGTTTCTGATATTTTAAAGGAAGGTGTGCCACC AGAGCCTTGTGAGCCACTGGAAGCCTTCTGAAAGATCTCTCATATCTTCTCACATCCTCCTCTGCAGCTTCCGAATAGTTGATGTAGGCAGAGA TGATGCGGCGAAGGGATTGGATTTCAAGGGATTCTTCGTACTTCTTCCGTCGAATAATAGCTTCCTCATATTCATCCTCAACTGCTGCTGCTGC TGACTTGTTGTTGTTGTTTGACATTTTTGTTTATGCTTGTATTGTCACTGTGTTTTTGTTTCTGTTTAGCGGCGAACCAACCAAACAACCAGCA AACAAAGCTTTATTATCTAATAACCAGTTGCTCAAGATGATGCGGA |
Primers for UN61842 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GGGATTGGATTTCAAGGGAT | 59.959 | 20 | GTTCGCCGCTAAACAGAAAC | 59.889 | 20 | 159 | 1611 | 1769 |
| 2 | AAGGGATTGGATTTCAAGGG | 60.124 | 20 | GTTCGCCGCTAAACAGAAAC | 59.889 | 20 | 161 | 1609 | 1769 |
| 3 | GGGATTGGATTTCAAGGGAT | 59.959 | 20 | TTTGTTTGCTGGTTGTTTGG | 59.603 | 20 | 182 | 1611 | 1792 |