Simple sequence repeat (SSR)
| >UN61400 CCCTTAGCCATAGGTGGACTCTTAGAAACAAAGTCCACAGACTCGCTTTCTGTATCCCCCAGCTATTGTCATGCAGTAACCTTGGCTCTCTTGA ATCTAGTTAAGGTTCTTAGAAGGCAGTCATTGATATGTTCTTCGACTTGCTCTTTGAGTTTCCACCACCTCCCTTTCTTTTAACAACACAATAT CCATTTTTTCTCGAGTCTATGCTAGACGTAATGTCCCCTGATGATGATGATGACCCTCCTTGTGAAGCATTGTCTTCAGCAGAACTGTCGTCAC TATCACCTCCATATGTTGTTCCAGATCCACTCAACAAACTCTTTACATGCTGTGACTTGTTCACCTCAGGTGCACTTTTCTGCACGGTTTTAAC ACTAGCCAGGCCCAAAGTCACCCGTGGTTTGTTGCTCTTTTGATTCAGAACTTCAGCTGATGGTTCACAATGTGCTTTATTAGCATGGGCTGAC TTACTGATTCTTGGAGCATCGATCTTACTTTTCTTTTTTGGAGTTTCAAACTGATCAGTATTTGGGATATTCGGATCGTTTACCACATTGGTGG GATATTCAGGGCCCGTCACTGAAGATTTTTTATTCTTCTTCGGTTTTGTCACTAAACCCACATCAGAAACTTGTGCGTCTCTCCCTTTCACTTC ATCACCGTCTTTTCTGGCAGCATCAAGCAAGGTAGTCTCGTTCAAATGTGGATCAGATACTTCTGTAGACATACCGCCTTCACCATTCTTTGCA GATTTTTTGGTTTTCTTTTTCCTTTTGTTTTTCTTTTCACCATCCATATTCTCGTTCTGATTTTCCGGTTCTTTATCAATACCCTCGTCATTTC CCTGACTAACATTTTTCTCAGTTAATGTTATAACTTGACTTTCTTCTCTGCCAGAATGAGGCAAAACGTTTTTCTCATTTGTCACGCTTGAGGC ATCATTTCTTGTGGCGG |
Primers for UN61400 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | TTTGAGTTTCCACCACCTCC | 59.943 | 20 | GTGCAGAAAAGTGCACCTGA | 60.032 | 20 | 221 | 147 | 367 |
| 2 | AGTTTCCACCACCTCCCTTT | 59.834 | 20 | GTGCAGAAAAGTGCACCTGA | 60.032 | 20 | 217 | 151 | 367 |
| 3 | TTTGAGTTTCCACCACCTCC | 59.943 | 20 | AAAAGAGCAACAAACCACGG | 60.147 | 20 | 271 | 147 | 417 |