Simple sequence repeat (SSR)
| >UN03200 TTTAAAAAAGATAATAGAATTAAAAATACCACATTGTTTAAAAAGAGTTCACGAAAGAGTAACTTAAGATAAAGAAATACGGGTTTACAAAGCT GCTATTAAGACAAATGATTACTTTTTGCTACATATAATAAAGACTCCATTTGCATAACTTTGCCGGAACTTGAGAAGATTCAGCTGGTGTCCAA AACAAAAACATGATGAAATCTAGCGACCATGACCCATGTAAGGTGCACCACCCTGCTGCCTATTGCCTCCTTGACCACCCTGTGGATTCGGGTA TCCACCTTGTTGACCACCATAGCCTTGATTTCCATACCCGCCCGGCATCCCTTGTGGCGGCCCACCAAGTCCCAAAAGATTCCCAAGTCCAGCT CCTTGAGTAGCAAGTAATGCAGTCAACGCCTGACCCAAAGCCGGAGTCAATGCAGGATTAACACCACCTTGATTATAAGACGGACCCGAAGGAG CCATCAAATGACCACCACCACCAACACCACCACCACCATGTCCTCCACCACCTCCATACCTACCCTTCTTCGACGGATAATGATTCCCCCCACT ACCAAACTGATGCGGCTGCTGAAAGTGCGACTTGCCCTGCTTAGGACCATCAACCGCTTTCTGAACATTCAAAGTATGCCCTTCAAATATCTTA TGAGGCTCCTCCAACGCCTTCTTCGCACTCTCAACACTCTTGTAAACAAACAACGCAAACCCTCTGGGCTTCCCCGTCTGCTTATCCAACCCCA AGGGCCCATCATCAATCTCCCCAAATTGCGCAAAAAACTCCGTCAGCTTCCCCGGGTCAATATCCGCAGCCACATTGCTCACAAATATCTTCCT CTGAGTATACTCAGACACATTACTCACAGCGGGCGAAAACGCAGGGACCGGGCCAGCAGACGCCAGCTGGCAAGAAGTCATCCTGTTCCCAATC TTCTTCTGAGGCTCCTTTAACGCCTTCTGCGCGCCAGACCTGTGCTTAAACAAAATAAACGCATACCCTTTGGATTTTCCTGAAACTTTATCAA CCACAGCTTTGCAATCCTCGATTTCGCCGTATCGCCCGAATTCGGATATCAGAAGATCCGAATTGGTGTCCCAACCTAACCCATGAACAAAAAT CTTCCTATGAGCTGGATCAGCATCAGCTATCTTCTCAACGCTTGATATAAGCTCAGGGTGTTTGGAAACAGCTTCTTTTAAAAGTAACAAGAGC TGCTCCTTTGAGAAAGGCTCTAGAAGCTTCTCCACTGGCTCATCATCATCATCATCTTCCTCCTCGTTTTCTTCTTGTTTGATGACGACATCAG TGACGTCATTGTTTTCTTCTTCTGCTGGTTCCTCTTCTTCTACTTCTTCTTCTTCTTCTTGTGGCTCTTCTTCGTCATCAGGAACAGCTTGTTC GTCTTCGATGACGTCATCAGCTTCTTCTTCGGGTTTGACGTCATCAGCTTCTTCTTCTTGTTGTTGTTGTTGTGGTTCTGGTTCTTCGGTGGAA GGCTGGGAAGCACGGGATTTTCGTTTTTTGGCCATGGAAGAAGATGAGATTATTGTTTTTTAGGGTTTTGTTTTGTTTTGTTTTGGGGATAGAA AGAAAGAGAGAATGAGATGAGTGGTGTGTGTGTGTGTGTGTGTGAACCTTGGGACTATAAACAACGAAACACACGTGTTACCATATGACCAACA CTGTTCAAATCACCTTCAAGCATGACGTGGAGAGCACTGTAACTACTAGTATTCATTAGCTCGGATCAGGCTAAC |
Primers for UN03200 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GTTCTGGTTCTTCGGTGGAA | 60.088 | 20 | AGCCTGATCCGAGCTAATGA | 59.939 | 20 | 280 | 1485 | 1764 |
| 2 | GGCCATGGAAGAAGATGAGA | 60.158 | 20 | AGCCTGATCCGAGCTAATGA | 59.939 | 20 | 231 | 1534 | 1764 |
| 3 | GTTCTGGTTCTTCGGTGGAA | 60.088 | 20 | GCCTGATCCGAGCTAATGAA | 60.318 | 20 | 279 | 1485 | 1763 |