Simple sequence repeat (SSR)
>UN59174 ATAAAAATGAGATTGAATATAAATCGAGATAAATTAAATGAAGAATGTAAATGGTGTGTAAAGAATCACGGTTTTCTCCAATACTACCTTTTAA GCAGCTCAGTGAAAAAGCTTCAAGCACAGCCTGTTTGAACATTTCTTGCTCGTGATGACTTCAGAGAATGTATCAACAAGTTGCTCCGCAAGCA AAGCTGGATCGTCCATAAATGTGTCCACAAACACCTTTACTATTCTAACCTCTTGTGGACTCGCTCTCAAGCTGTACCAAGTGAGAAATTTCTG TCTAAAACTTGTATCTATATGCTGGTTACACTCTAACGATCTGATCACTTTCACATAATATTCGAAATCCCTATCTTGCTCTTCTTCACCACTC CTCTTTTTTGAAGAGCTACCATCTTGTTCCTTACCAGACCCATCATCAAGATTGTTTTTTGAAGGTTCTGGTCTCGATTTTCTTGCTATTTTAC CATCTTTTGAGCTTTCTGCTTTGCAAGGAGAAATGGGTAATTCGACTTCTGTCATGTGAGCAAACTGATCAGTTTTTTTCCCATTTTCGATAGT GTCATCCTTATCATCTGGAGCAATATTTTCTGTTTCATTACAGTTGTTTGATTGTTTCTCCTTCGGGTCTTTGTAGCCAGCAATGTTGTTATTT TCATCTTCGACTGAAGAGGGATTCGAAAGACTGCTAGAATTCGTTGCCAGACTTTGACTTCGTTTAAGTTTCTCATTATCTTTGACAACAGGAT CATGAGTGTGAGACAGAACTGAATCAAGACACTCGACTGCAACTTTGCATAGTCTCTGAACCTCTTGACCAGAAGCGAGCCGGTTGATAATACC CCTGGCTTGTCTGACTGGCAAACCGGTTAAGGGGCCTACATCTGCTTTCAGTATTTCAATTATTTCTTTCACAATTTTGTGAAGATTCTCATGA CGCACGGTCCCGCTCAAGAGCTTCTGGCTCAAAGAAGCCCGATAGCACAAAATGTCAACTCGCCTGGTGTCCCTTGCTATAGTCATTTGTTTTC GCCAACATTGGAGCAAATCATTCACTTTACCACACGATATACAGTAAAAGCTCCCATCTAGTCCTCTGCTATGCTCATCTTTTGGAATGCCAGA TTTTTCATGTTGTAAGGCACATTCAAGGTGACACGAATACCCACATGACTTTTCCTGATATGGAGGTTCCGAGCTGCAAGTCAGCCATAAACTC GGGTCCTTGTTGTCATCATATTTATGACAAATGCAGCAAGAACATCGCTTACAGAATTCATCTTCTTGGTATAATTTAGCTCTACAAGCAGAAT TTTTGCATACTTTCATCTCGTCAGAACTAGTATCAGAATCAACAATGTTGATTACAATATCAGGTTGGTCGGATTTCCTCTGTCTTTTGGTGGC ATTTTCAAGACCCTCAAGAGTCTTCTTTGATTTTTTTTTATCAGCCACAATTTTAAGAAGGATGTCAATGAGTTTCAATTTTGATACTCCCGTA TACTTTTTATCTTTTCCTGTTTCGGTGCATAGAAGTTGTAAAATGTCTTGTCGGGTCCATGATTCCAACAGTTCCGGTGCCCCCTGTGACCACT CTGCTATTTCGTACACGAGTTCTCTCTTTGCCTCCATCCTTAACTTGCTATACTACGATGGATCTAACACAAACCCTTATAAAAACTCAAAGGG TTCGGTGTTGTTGTTGTTGTTCATCATGTGTTTTTATATCCAACCGTTTTTGTGTATTATTAGTCACGTATAAATAGAGACAAATAAAGCAAGC ATGTGT |
Primers for UN59174 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CTTTTCCTGTTTCGGTGCAT | 60.11 | 20 | CACATGCTTGCTTTATTTGTCTC | 58.958 | 23 | 277 | 1515 | 1791 |
2 | TGCCTCCATCCTTAACTTGC | 60.214 | 20 | CACATGCTTGCTTTATTTGTCTC | 58.958 | 23 | 165 | 1627 | 1791 |
3 | GTCTTGTCGGGTCCATGATT | 59.786 | 20 | CACATGCTTGCTTTATTTGTCTC | 58.958 | 23 | 243 | 1549 | 1791 |