Simple sequence repeat (SSR)
>UN55509 GTGAGTTTCCCTTTCTTTTGTGGGTTCTCCTCGATACCTTCAGGCGAATTTGTGCATCTGTTCTCTTTAGTTACTGAACGACTTGCTTGTTTAC CAATTGCTTGTGAGCTTTCCCCAAAGAAGGCTTGGCTGAAATCGGGGAAAGCTCGAGATCCTTCACCTTCCACACTGGTCCCACTTATTTGTGT GTGGGTCCCACTGGTTCCGGTCGAGCCAAGGCCAAGCTGGCTCTGCAAGGCATGCTGCTGCTGCTGCATCAGATTGAAAGGTAGTTGCTGACCA TACACTGTATGTGATTGAGCCATCATTGGGGACTGTGGGACCATGTGTTGGGATTGCATTTGTTGTTGCTGCATGGTGTTCATATATGGCTGAA GATGAATAGGAGATTGTTTTGGTTGACAGTCGGCTATTGCAGCCAAGTACATGAGATTGTGCTGAAGCCTTGTTTGGTTCCTGTACAAAAATAG CAGTGGTTCACAACCTATATGACCATAGTACTATAGTAGTATAGTAAACTGCCAATGTTGC |
Primers for UN55509 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CCTTCACCTTCCACACTGGT | 60.002 | 20 | CTGCAATAGCCGACTGTCAA | 60.011 | 20 | 265 | 154 | 418 |
2 | CTTCCACACTGGTCCCACTT | 60.002 | 20 | CTGCAATAGCCGACTGTCAA | 60.011 | 20 | 258 | 161 | 418 |
3 | CTTCCACACTGGTCCCACTT | 60.002 | 20 | TGCAATAGCCGACTGTCAAC | 59.871 | 20 | 257 | 161 | 417 |