Simple sequence repeat (SSR)
>UN54737 TTTTTAATCAACAAATAAATGAACACATTTCATAAATATAACTATAGTTCCTGTTTCCTTATTTTTACACCAACATATACAACAATATATATTC TCAAAAATCAAAATCATCTTGATTCGGCTTGGGCGAAGTAAGCAAAGCTGCATAGAGTCTTAATCGGTCCTCCCCAAGCGAAGAGCATCTTGAT AATGGTCTTCTTGGCCTAATAAACGACAATGAGGTCAAAGTGAGCCTATGTCGATATCTCCTCCAAGCCAATTGAATGGCAACCGCTGCCCAAG TTCTCCACCCAGGAGAATAATATCGTGCACTCCTCTTTACCTTTTCATTTACAAATGTGTATCTAAAATGTTGTGTAACGTATTTTACATCATC GGCTTCTAGCCCAAAAGCCTCCGTTGTTTCAAGGGTCACAAGTGTTGATGATGATGGAGGTAACCTTTCAATGAAGGGTCGCCTAAGGCACCAT GATAAAAGCTCGTCGCCGCTAAAGTTTCCAGGGCCTAACATGCAACAACTTTTAACACCGTCTCGGAGAAATTGACTACTTTGGAGATGACCTC TTACTATGAACAACATTCTTTGTACAGGATCACCTTCTCTTGCAATAGTTTCTCCCTTCGTAAAAATAAGGGATTTCACCCGGTCACATATGTT CTCGAGTACTAAATTGTCCATATGCTGAAATAGAGGCACCTGTCGAACTAAGTCCAAGCAAAGATGATACTTAATGTCTCTCCGTAGGCCCTCA GGGAGATTACGTATCATCTCACATTCATCTACACCACGCATTGCAGCCCATCGTTGCCTCTCATAGTTCCTTACTCTTTGTCGGTACCGTTGAG GTAGGTGCCTCCTCCTCATCCACCACTCTATATTCCTCATTTTCAATTGCATAGCTTGTTTCTTTGATGTTGTCGCGTGTAGAAAGACCTTTAT ATTTCCTATCAACATAGTGACTAGAAGGAGCCCCGTTGTGAGGACGATTATGATAAAAAGAACTTCTAGCCAGTCCGTTGTGCTCTCCAAGTTC CCAAATGTACTTAGTGTCATAAGTCCCCAAAAAATGGGAAAGAGTATCTTTTCCAAACGGCTATCATTGGTAACAAGTTGAAGAGTCCATTTAT AAGCTCCATAGCTAAAACTGTCTTCGTTCTCAAGGCAAGCTGACCGTGCCTTAGTATCCGAACTCCATGAAAGCCTGGCTTGATCATTCCTGAA GTTGTTGGTGCCATAATAAATAGGGTCTTGACATGTCAAAAATCTAGAAAAACAAAGTCCGTTTGCTTCCATACATTTTTCTTTCAAGCATTTT GCTGCCCTTTGTGTGCCAAGCAAGTACCAACAAGCTCCTACAGCATGAGAGGCAACAAAGTATGCGATCAAATTGAGAGCGATACCCCACCAGA CGGTACCAAATATGTATCCAGATAGATTTTGCATTCGTCGCAAAAGACATATTGAGTGATATATCTTCGGTAGGTATTGGAATAGAAACATGAT TAAAGCAATTGTCATTGTCTCCGTCGTCGAACCTTTCTTTAGCAAAGCCGGGATCACTACCCATAATACTACCTGTGGTATAGGAAGGATAACG AATAGATCGAAAAAGAAGCCTTTCTTAGCTTGGCGTATGATCCGAGCCGCAACTTTACGTGCAATACCGCCATCATGGTTTAAGCCACGATGGT GATGAGGTGACCTCCACCACCTGCTCATCTTAAGCTGCAACCACATGTTCCACACGTGCAAAGCATCCGTCACACTCCGTAAAACAGTCACAGT AACCGCGAACCATCCATCCACAAACACACACATGCATGTCTCACTTATGGAGAATGTGTAGAAGAAAAGTGGATCAATAAACAAACCAGTAGCA CATACTAAAAGGAACACACGGTTCCAGTCTTGAAACCATTGGGATCTAGGGTCTAGATTCACTCTAGCACGTGCAGGGCACCTGCTAGAGATGT AATCCATGCATTCTTGTGACTTATTAAGTTGAAGTGCTTCTTCTTCTTGAACGTCTTCATCTTCTTCTTCATCATCACTTGTGGTATCAGTGAA AAATTCATCAAAGTTATGGCTGCTAGCCATGTTACATAAGTGTGTGTTTTTTCACCTTGACAGTGTGTGTGTGTGTGTGTATGTGTGTTTAGGG ATGGGTTTATGATTTGAGTCAGAAAGTGGGCAGAGGGAATATATGTAG |
Primers for UN54737 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | GGGCACCTGCTAGAGATGTAA | 59.35 | 21 | ATTCCCTCTGCCCACTTTCT | 60.074 | 20 | 247 | 1956 | 2202 |
2 | AGGGCACCTGCTAGAGATGTA | 58.972 | 21 | ATTCCCTCTGCCCACTTTCT | 60.074 | 20 | 248 | 1955 | 2202 |
3 | GGGCACCTGCTAGAGATGTA | 57.922 | 20 | ATTCCCTCTGCCCACTTTCT | 60.074 | 20 | 247 | 1956 | 2202 |