Simple sequence repeat (SSR)
>UN54138 TCTAAAACTGAAAACATTTAACCTTTTTTCTAGTAATCTAAATAAACAACTTACTATCAAGATCAACATGTTTAGATGAAGTAATTCACAATCA AACAAAAAATATTCTTAAAACTAAGAAATCTATGTTTTTTCTGTCTCCTCAAAACTTGAAATTATTTTAGGTCAGCCCATCTCAGTTCGTTTTC TTATCCTCTGCACTAGTGCCTGAGGTCAAGGCTGCGGCTGCTTCATCCTCGTCCTCCCCACCAAAACCAAACTCATTCACTCTCTTTTTGTCCA CTGGATAAGCCCATCTTTGATACAAATATATCAAAAATATAACATCATCACGAAAGACAGAAAGTCGATGTAGCATTGGCATTTTTATCACAAA GGCGAAGAGATCATCGATAATTGTGTTCAAAAACTTGTACGTCATTTGCCTCCATGGCATATGAGCAACTGATTTTAGCTTGTAATTGATGAAC AGCTGTGGGCACATCATAATGAAACCGAACATGTATACACAGCTTGTAAGTGATGAGAGAATCCAGGAGTACCAACTCTTGTGGGTTTCATACA TAAGTGAATATACAGAGGAACAGCCAACAAGTACAAAAAGTACATATGACAAATACTTCATCGCAAGATCATCGTATTCTTTTGTCTTGTTTCC TGCATACGAGTCTCTATCACTGAACTTTAATTTAGGTATGCTACCACTTCTATCAACCTCAATGTGCATTGCTTTCCCTATTTTCCAGAACTCA ATGCAGACACCAACCCCAGAGCTTGCAAGAATCATCCACGAGGTATCATTGTCCAATAAGTAAAGGAAGATAACAAGCTGACATATGAAGCTCA CAACGACTGATTTTGCAGAAAGCCCTTCCATAGATTTGTTTTTGTTCCAGAATTGTATATCGTTCTTGAATGCCAAAAAGTCGAAGACCGAATG AAGCAGTGAAACACACATGGTGATTCCCAGGAGATAAGGATTTCCTTCCACGAATACCCTCTTAAGTTCATCAGCCTCTCCTTCAAGCATACTT CCATAACTGCGATGAATTTGGAATGACTGATCGATTTGCATAAATAGCTGCCACTTGGTCATGCTTATTGGGGCCACCTCTAGATGTAAATCCA GTTCCTTCACTGTATCATTGATTGCTATAAGCTTATCTCTGAGTAACCAAAATTCATTGAAGAAGACCGTTGGATAATAGTTCCCTGTGGTAGG TTCAATATTCATGTATGGAGCAACATTAGGTGGAATAGACCCTTTTGAGTACTTCGTAAAATCGTCAACCAAGTTAATCGTGATATTTGGTTTC CAATATGAGATGTACTCCGTGGGACCATCATCCTTCGAATCAGCTTCAGGTTCTTCAACACCCTCAGAAACTGCTTCATCCTCATTAGTGCCTT TGGAGTTCCCCAAAAGGCTCTTCTTTTTGTTTGCTTTTGCCTTGGGCAAGTATGTCACCACAGGATGTTTCAGTGCAAAGGCAGCCAAAGGCTG ATACTCAGGGTCATTTGGGTCTACTGGAAACCCTGAACGTGCAAAGAAGACATGCGCAAAAAGACTCCCGTTATGCTTCAAAGCCTCAGATGGA TGATACTTGAAAGAAAGAGTCCTGGTGCTTTCTGGTTTCCATACTGCATAAGGTATGTTGGATTCATGCCATATAAGTGCGTCTTCATTCCCAA AGTCATTAAACTTGTCATGTTGAGATAGATAAAACCACATATCGATAGATTCAGATTTTTGAAAGAGGTTAGAGATCTGGACAGCAGGACCGGA ACCCGAAAGGGGTTGTTTACCACCAGAAGAAGAAGAGAAAAACTTGGAAGCAAAATAATAAATAACAGCTATTCTTATGATCCCTGTGAACATC TGCCCAATCCCTTGCGGCTGCTGTTGTTGTTCTCCGTCTCCCTCCGCCGCTGCTGCTGCTGCTGCCGGCGGTGCCATATTGGTATATCTCAGTC AGTCCGTCGGTCGGGTGGTTTAACCAGAGAGAGAAAAAGTAAAAGAGAGATGCAATCTGCAAAGTGAACAAGGGGTTATGTTTTAT |
Primers for UN54138 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ACCCGAAAGGGGTTGTTTAC | 60.089 | 20 | ACCCCTTGTTCACTTTGCAG | 60.149 | 20 | 264 | 1787 | 2050 |
2 | TGCTGTTGTTGTTCTCCGTC | 59.88 | 20 | ACCCCTTGTTCACTTTGCAG | 60.149 | 20 | 152 | 1899 | 2050 |
3 | ACCCGAAAGGGGTTGTTTAC | 60.089 | 20 | ACCGACGGACTGACTGAGAT | 59.713 | 20 | 199 | 1787 | 1985 |