Simple sequence repeat (SSR)
>UN46468 CGGTCTTCACTCCTTCCTCATATACACTTTCCGTGACAGTTTCAGGGCCAAAAAATTTATCAAATGTAAACGAAGATTGTTGAGTCACACGCTC ATTCGGGAATGGTTTATATACAATAGAATGATCATCAATGCATTCCCACGATACAGTATCTTTCGCCAACTGTTCCCTTTTATTTAGAGGCCTT AATCGTACTGTTACAACAATTTTCTCTTCCCGTACTCTTGACCCTCCCGGTGTTGATATCGGAGTTCTTTCAATTTTGGTATTTGGTGTACCAG GAATACTCCTTGTCGTCATTTTCGTTTATTCCAAATTCGGCAAAAGACGATCTAACCCTCACGGTTTGACCTTGTCCTGTCCAATCGCTTATCA AAACCTTAATCAGATCTTCAAATGTATAGATTGATGGATATTGAATGTATGTGTGTGTGTGTTTTTATGGTGTTTTAGTGTGTGTGAGAAATGG AGATG |
Primers for UN46468 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TTCCAAATTCGGCAAAAGAC | 60.053 | 20 | CATCTCCATTTCTCACACACACT | 59.126 | 23 | 165 | 311 | 475 |
2 | CAAATTCGGCAAAAGACGAT | 60.074 | 20 | CATCTCCATTTCTCACACACACT | 59.126 | 23 | 162 | 314 | 475 |
3 | TTCCAAATTCGGCAAAAGAC | 60.053 | 20 | CATCTCCATTTCTCACACACAC | 58.058 | 22 | 165 | 311 | 475 |