Simple sequence repeat (SSR)
>UN46068 CGCTCATCGCCCTAGATCGCTCTTAGAAAATCTTCCCCACCTACAATTATGTTGTGTGACAAAAAAACCAAAGGATTTTTATAAGAACCTAAAG CCCTTGTCAATCCCGCAATTTCTTCCAATACCTTTGTTAACCACATCACCCGCTGCCGCCACTCACACTATCACAAACAGCCCAGCTACAATCC CACCCTCCAGGAGTCCACAAAGAAAAAAAAGGCACATGTAATATCGCACCTGGCTGAAGCGTAGTCCCACGTCCGTGCTATATAATTCTATATA TTTGATCGTTAACATACCACGATTATACCTGTAACAAAAGCACGCTGCCCAAACCCGCAAGACTTCCACCGCGACGAATCCCTGTCACCGTTCT ATAATACTGAAGCACCTGTTTTGGCCCGGTTTGGCTGATCTTCTCCTCCACAGTTGTGCCTCTGTGTTGTCTTTGCGTTGTATCACCACAAACA ACACAAACCCAAAGGCGGTCAGAGATAGAGAGAGAGAGAGAGCCGGTGAGATAGAATCACCGATTAGTCATAAGCAGATGTGTTAGATAGAAGA CACGTG |
Primers for UN46068 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | TGCCTCTGTGTTGTCTTTGC | 60.032 | 20 | CATCTGCTTATGACTAATCGGTG | 58.8 | 23 | 118 | 433 | 550 |
2 | TGCCTCTGTGTTGTCTTTGC | 60.032 | 20 | CACATCTGCTTATGACTAATCGG | 58.8 | 23 | 120 | 433 | 552 |
3 | TGCCTCTGTGTTGTCTTTGC | 60.032 | 20 | CACATCTGCTTATGACTAATCGGT | 59.586 | 24 | 120 | 433 | 552 |