Simple sequence repeat (SSR)
>UN46067 CGCTCATCGCCCTAGATCGCTCTTAGAAAATCTTCCCCACCTACAATTATGTTGTGTGACAAAAAAACCAAAGGATTTTTATAAGAACCTAAAG CCCTTGTCAATCCCGCAATTTCTTCCAATACCTTTGTTAACCACATCACCCGCTGCCGCCACTCACACTATCACAAACAGCCCAGCTACAATCC CACCCTCCAGGAGTCCACAAAGAAAAAAAAGGCACATGTAATATCGCACCTGGCTGAAGCGTAGTCCCACGTCCGTGCTATATAATTCTATATA TTTGATCGTTAACATACCACGATTATACCTGCCCAAAAACAAACTGTATAACAAAAGCACGCTGCCCAAACCCGCAAGACTTCCACCGCGACGA ATCCCTGTCACCGTTCTATAATACTGAAGCACCTGTTTTGGCCCGGTTTGGCTGATCTTCTCCTCCACAGTTGTGCCTCTGTGTTGTCTTTGCG TTGTATCACCACAAACAACACAAACCCAAAGGCGGTCAGAGATAGAGAGAGAGAGAGAGCCGGTGAGATAGAATCACCGATTAGTCATAAGCAG ATGTGTTAGATAGAAGACACGTG |
Primers for UN46067 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | ACCTGCCCAAAAACAAACTG | 60.008 | 20 | CATCTGCTTATGACTAATCGGTG | 58.8 | 23 | 259 | 309 | 567 |
2 | ACCTGCCCAAAAACAAACTG | 60.008 | 20 | CACATCTGCTTATGACTAATCGG | 58.8 | 23 | 261 | 309 | 569 |
3 | CCTGCCCAAAAACAAACTGT | 60.008 | 20 | CATCTGCTTATGACTAATCGGTG | 58.8 | 23 | 258 | 310 | 567 |