Simple sequence repeat (SSR)
| >UN45000 GAAGAATGGGGCTAGCTATAGGGGTGGAGGAACAAACCCGAAAACCCAACCTAGACTCACAGAACCCATTTCAGGTTATTGTGCTCGTTTAAAA GCTTCAAAAGGACAAAAAGGTGATTCAATGGTGATGTGAGAGTATAACATACCTAAACATATAACTTAGATTCTTGTATCTTTAGAAGTTCAAG TCAGTTTTATCGGCTCATGACACAGTTGCTGGATCTCATTTTCAAGTGTTTCTAAAAGTTTAGCCTTTGTCCGCCTGTATATCCAAGCTTCAGT AGTTCGATCCCAGTCAAATCTCGAAGGACCACTCACAGGTGAAGACATCCAAATCTGTCTGTTCGGTGTCTGTTTGTTCAGCACGTAGGTTCCC AAGCTACCAAACTTCACAGTTAAAACTTGGTTCCCGTAGTCTATGTCAAAACCATCAATATCCACAGAATCGCCATATTCCTCTATCTTCTCTA ACAAATCATGAATTGTTGCATCGGCCAGTTTATGAAATTCATCCTCCTCTAGCAAAGCACTGTAGTCAATGGGAGCAGGTCCTTCGAATTTAGA CGTCTGTGAGCAGAAATATTTACTAGAAATAGCACGAGTAGTTTTATTAATATCGTTATACAAAGTGGAATGATTAAGCTTCTGAATCGTTGAA TTAGATGATGATGATAAGAATCGAGAGCTGTTTATTGAATTCAAAGATCTAGATAATCTTCTTATTAGCACCTTTGAATAAGCAGCAGCAGCAG CAGCAGCAGCCATTTTTTGTTTTGTTTTGTTTGGGTTTTAGAATGGA |
Primers for UN45000 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | GGAGCAGGTCCTTCGAATTT | 60.578 | 20 | TCCATTCTAAAACCCAAACAAAA | 59.75 | 23 | 258 | 542 | 799 |
| 2 | GGAGCAGGTCCTTCGAATTT | 60.578 | 20 | AAAACCCAAACAAAACAAAACAA | 59.702 | 23 | 250 | 542 | 791 |
| 3 | GGAGCAGGTCCTTCGAATTT | 60.578 | 20 | AACCCAAACAAAACAAAACAAAA | 59.702 | 23 | 248 | 542 | 789 |