Simple sequence repeat (SSR)
>UN43548 CTGCAATGTGCTTGGATATTGACCACACCGCTTAGCAAGCTCTGAAGTTGTCATGCCCTCAAATATTTCAACTGTTTTATCCGAATAAGACTTG GCAGTCTTTTGAAGTCTAGGAGGCACATATGGTGCTTCAACCGGTGGTTTAACATTTTCAGGCTTCTTTCTGAACTTCCCTTTCTTATGTTTCT TTAGACCACCTTCCTCAAGGACATCACCTCTTCTGCTGCCGAGTAATTCCGGTGTTGCATGGAACCGCCTTATTAAGAATCTATTTGTCAAGAA GTTTAAAGTGTCATCACCAAGTAAAGCTGAGTTGCTCGTATATCCTCTAATGTGTCCCACCGAAGGCGAAAGCAAATTTGATTTTACACCACCA AATGAATTGCGCAGAACAGAATCTCTAGATGCTGCTATTAAATTAAGAGTCCTCGAAAGACTAGCACGAACGCTCTTTTTCCCAAGTTCCCTCC ACGCCATTCATAAGTATAGCTCACAACTTCTGCAAACTGCAATTGGGTTGTGTGTGTGTGTGCGCTTGAGTGCTGGTTGTTGTATTGGTGTGGT GATTGTCCGGTGAGGATGACCGGAGATTGGTGGTGGTGGGTCAAGG |
Primers for UN43548 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | CCTCCACGCCATTCATAAGT | 59.955 | 20 | GTCATCCTCACCGGACAATC | 60.335 | 20 | 119 | 466 | 584 |
2 | GCTCTTTTTCCCAAGTTCCC | 60.053 | 20 | GTCATCCTCACCGGACAATC | 60.335 | 20 | 137 | 448 | 584 |
3 | CTTTTTCCCAAGTTCCCTCC | 59.912 | 20 | GTCATCCTCACCGGACAATC | 60.335 | 20 | 134 | 451 | 584 |