Chrysanthenum transcriptome database

Simple sequence repeat (SSR)

>UN42366
TGAATCATCTTAAGAACACAACTCAAGAGATATAGATAAATTATCATTTAGAAACCAAAAGAGTAGACTGCGTATAAGTCTTAAAAACCAAATT
CAACTTAAGTAATTAACAGACAAAATACTGCATCTTTCCAGCTGCGAAGTTCCCAAAACAACTTAACCTTGATCCAACTATCCTACTTATAATA
AAACTAACATTTTACCTTCTGAACTTGGGACGTTTGGGAGCACTGCTACTAGGACCTGCACGGGACTTGCCAAACGCCTTCATCTTCCTTCGTT
TCCTCTCCTCTTCGCTGTCTGACTCAACACCTTTCTCCTTATCAGCATTGCTTGCTTCTCTCTCCAATTCTTCCCACGTCTTCCCTTCTTCTTC
CTCAGACCCTTCCTCTTCTTCAGACCCATCATCATCATCATCAGACTCGACCAATGATGCGCTGTCAGACTCATCATCTTCTGACTCAGATTCA
GGCTCTGCATCAGACGGCTCGTAACCCTGGTCAGACTCCTGTGAACCATCAGAATCAGAATCACTAGCTTCCAAGTTCAAAAACTCCCATCCAC
CTTCATCAATAAAGTTTTGTGGGTCGTCAGTAATTGTTTTCAATATGGCCCGCCAGTTCATGTTCAGCCTGCTTTCGTAGTACTTAATGTCGGT
TGTGTCAAGCCATTCTTTGATACCATCAAGTGAAGTGGAAGGAATTGAATCAATGCGAAGAACATCACGTTTAAAATCTTTAAACACGATTGCC
ATGTCAAAATTCTTCTGACCGAGCCCAACTCTTTCAAGATTTACAATTTCTATTTCACTCAATGTAACCACAAGAAATGGAGTCTCGATCAGCT
CGACCAAACAGCTTGAAGTTGGAACTATGAAAGCAGAAGCTTTATGGGGTACCCCGTGAAACCCAAGTTCTCTTAAAGGCTGGTCAAACTCAAG
GTCAAACGCTTTAAATTTGGGCTGACCCCAAAGATCGTTAACCCGATTGACAAAACTTTGAAAATCCATATTGATCTTGTTTTTGCGGTCCCGT
TCTCTTTGTTCTTCCTCAATCTCATCTGGATCATACGCCGACCTTTTTCCACCTCCGAGTGTTTGCACAACATCCATCACTTCAACATAAAACT
GGACATCTTTTGTCTTTTTGTTTCCAACCATGATGTGGTTGTGAAGATGAAAGTGAAGCAACGTAATCATTTCTTTCTCTGCTGCTTGAAAAAA
CGCATGTTTGATATTACCAAACAGAATATCCACGCGTTCATCTGACCTAGAAGTCGAGTATCTGAAACCGTTGTCATGAGCCTCAAGTGTACCC
GGAAGCTTCCGCCCACGACCCGGAAATGGAGGACGAATCCAAAGATCAGTTAGCCTTATTGGTTTAAATTTATTACCAGCAAGCACAAGTTTCT
CTTGAGTAACCAATGATGCCCTCTCGGCTCTTTCAGACTCACGGGACAAAACATTTCTTCTAAGTGTTTTGATTTGCTGAACCACTTCACTAAT
ATGCCTTGGGTCTTTTGAACGAAAGGATACCTCTTTTAAGAAAATATCATTTTGATTCTTCAATAATGAGTTTGCATCCTGAGTCGAAAAGGGT
GTTCCGGGAGAACTAAATATTATCCTGATATAACAGTTTCGACTCGTATCAGCTTGACTTGAAACTGTCTTCACAGTAGCAATATGGAAGGGCA
CCATGCACCCATATATTGGGATAAGAATAGCTTCATTCTTCTGGTCAACAATAATCATCATTTCTCTTGGTGGAGGAAGATCGTTCACATTCTT
ATAAGCAATTAAATCATTAGAAGTTCTTGAAGAAGATCTACCATCACCTGTTGCACTTTTCCCACCAGCAAGCCGTTGAGCGGTTTCTTCGTTC
TTTTGACGCGCCAGCTCGGCTTGATGTTGTCTTCTTAGCTCTTCTTTAGACATTTCATGGTTGTCTGACCTTAAAGTTGTTTTAGAGAAAAGAG
CTTCATTACGTTTCGACTCAACTTTAGCTTGTGGCTTTTCGTCCTCTTCTTCGCCATCGTTAAAAGAATATGCAACGTCTTTAAATGCTTTAGT
GCTTAAAGAAGTCACAACCTCGCGACCGGTTTCAGTCACAATTACAGTATCAGCAAGTAAAAGGGCATAATTCTGACTCTTTGCTTTGCTACTC
TTAGCTTGCAAGTTTTGAAACCCTAGTGAGACGTTTAATACCATCCCTGCTTTCAAAATTCTTTCATTTTTCTCATTAAGGTTCAACCCCGACT
CACGAAACTCAAGACCTATTCCTGTCCCGGCTGATTTAGTCAGATTTGCAGTCAACTCAGGAGCTTCTTTCTCAACTACTGCATAAGCAGCCCT
GTAAACATCGCTAGCTTTATTACCAGCCTTCAACGCACCAATAGCAGCTTCATGGGCTTTGAGAAGAACCTGATAAGCTTTACTCTGTGTAGCA
TTTGAATCGATGAGAAACGTTCTAGCCACATTTGCACAGTAACTATTATACCGAGACCCAAGGGCACAAATGATCACACTAGCAGAGTCATAAT
ACAAATTATCATCATTGCTTGAAGCACTAGGTCTGAGATCAAAATTCCCGCCACTTTGGAAAATAGGGGGATAACAGATATCAACATTATCGGC
TTTCAGCTTCACCTTAATTCTAGACGGCTCCAAAATAGCTTTTTCAGTATCATCCATTAACGAAGCATGCGTTATTTTCTTTTCCTCGTCAATT
ACCTTCTCAAGCTTTGGAACAACATGTACTTTCATTGCAGATGCAGTAAGATATGCAGCTTTTTTCACATTTGTAAGCTCGCCACCCTCCTTAA
CAGCAAAAAGATCCGCCAATCCATTTGTAACATCAGCAAGCTTTATACCAGAAGACTTCAGCTTATCCGTCCAATTCTCTAGCAGCTTCCCTTC
AGGAGCCTCTCTTGATATATACCCAAGAACAGGGGTGCCTTGAGATTCAACGGCACGCAAAATTGCCTCCATTTGGGTCGACCCATCGTCGTTC
TTTTCTTTCACGTGCATCACAACATCTACACTTACAGCCTCTTTAGCTGCTTTTTTGACAACATCAAGAAGTGATGCCTTTTTCTTGCTGCATA
AGAAATGGATCTGTTTGTCTGAAAACACCATTATTGTTTCTGGGAATTCATAACCGAGTAACCAAATGTTGAGAGCTGACGATTTCAAATAACG
AAGGTCATCAGACGGAGGTGGAGTAGCAACTGCGAAAGCAGTAGAAGATCCCCACAACTCATCTCTGTTTTCCCGCCAGCTAGAATAAAGAGAT
TTTAGTCGTCGGATCAGAGTAGTCGCATCAATTGTATATCCAGGCCCAGCTCCACTAGCACCCTTACTGGCAGGCGGG

Primers for UN42366 SSR

Primer pairForward primer (5'-3') Reverse primer (5'-3')Product
SequenceTemperatureSizeSequenceTemperature SizeSizeStartEnd
1TCTCCAATTCTTCCCACGTC 60.0520AGTCTGACAGCGCATCATTG 60.01620105 343447
2TACTAGGACCTGCACGGGAC 60.13420AGTCTGACAGCGCATCATTG 60.01620213 235447
3TCTCCAATTCTTCCCACGTC 60.0520ATTGATGAAGGTGGATGGGA 60.13520232 343574