Simple sequence repeat (SSR)
>UN40055 TCTGTCTGCACACAGACACCCTCAATACAATCAACGACGACCAGTGCACCATCAGTAATACGTAGAGCAGCAGTAACCTCGGAAGAAAAATCAA CGTGCCCAGGTGAATCAATGAGATTGATAAGGTACTCATTTCCATTACGTTCACCAGTAAAACTCTTGAGATCTTCATCAGACATCTGGTAGTA GAGGGATATACCAGTTGACTTAATGGTGATACCGCGCTCTGCTTCATCAGCACGAGTGTCAGTCATTCGCACATCACCAGCAGTTTCTTGTGCA ATAATACCAACAGCAGCAGCAGCAGCTACAAGAGAGTCGGTCAAAGTTGATTTTCCGTGATCAACATGAGCA |
Primers for UN40055 SSR
Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
1 | AGAAAAATCAACGTGCCCAG | 60.11 | 20 | GCTCATGTTGATCACGGAAA | 59.654 | 20 | 270 | 84 | 353 |
2 | AGAAAAATCAACGTGCCCAG | 60.11 | 20 | CGGAAAATCAACTTTGACCG | 60.472 | 20 | 256 | 84 | 339 |
3 | AGAGCAGCAGTAACCTCGGA | 60.156 | 20 | CGGAAAATCAACTTTGACCG | 60.472 | 20 | 276 | 64 | 339 |