Simple sequence repeat (SSR)
| >UN38216 GCCGTAATCATTGACCACGAAAAAAGAAGCCATAAAACAACCAACAAGCCTTTAGTTTGCAGTATTATGTCGGAGATGCAAATATGCTACAAAC CAAATTCATGAGGTTTTGCAAATATGGCACCTGAATCACAAAGTAGCAAACATGTCTAAATAACCAAGAAAGCCAACAAAATGTATATAGTAGC TAGCTCATTGCTTAGAAGTTAACTGAAGGCTAGATAGCAATGGCTCGGGATGGGGCATAGTAGAAGAGTCATCTACAAAATCTTAAAAAAGTTT CTACTAGTTTGTCATAGAAGAAGTTGGGAGAAGTTCTGCCTGAGGGAAGGATGTGTTTGATGGGACATCCAGCAAAAGATCCTGGTCAGAATTT TCATCTGCATATTTAGTGTAATCAAGCATAATGCCACTATTATCAGGAGGCAAGGTGAATAGGCTTCTTGGGCTGAATGCTCTGCCATCATTAT CGACAACCTCCTTGTGTTCCTTGCTTGCTTTCTTAAATGCTCCCTTGGAGCTCTTACATGTATTCTTCATTCCTGGAATGGAGTTAATCTGGTT TGATTTTTGTACATTCACCAAACAGTTAGGTGATATGGTATTAGCTCCTCCAGTAACTACAGACCCTCTGTTATCCTTTTTGCACTTTGTATCC TGAATCAGATTATATTGTTCCACCCACTTGCATTTCGTCATATTACAAAGTGCAAGCTTCTTTAATGTTTTACTTTCTTCACTTTTCATTGCAG GTGCAGAGGGATCAAAATTTCCTTCTGTAAGAAGTTTCTGAAACGCTAGTAAGCTTTCCTCAAACTGAGGACTATCAAACATGCTTCTGATGCT ATCTGGTGATTGAACATTATCAGTAGGAGGTAAATACTGAACCAACAGCTGCTTTTCATCATTTGTCATTTGACTTGTAAACTTCTCAAAGTTG ATAATATCTTTTAAATCTATTTTGCACAGTGGTGAATTATGATTCACAAGTATCGGTAACTTTTCTTCATTATCCTTGTTAAATTGGTCTTGAT TCACTTGCATTTTAGATTTGTCATTCCCGCGGCTTGAAAATTTTCCACTTTTGTTGGTGGAATAAGCCTCGTTTTTGGTATCAAAAGATAGTGA ACTGGCTTCAGATTCCTCTTCTCGGGCTGCTGAATTTGGATGACGAATAAGCACGCTCCCATGTCCTATCTCAACAGATACCATTGGTGTGTCA CTCTCGAAAATCAACTCCTCAGATGATCCCGAAAAGTAAGATTGCTGTTCATGTAAGATTGTATATAAATCTCTAGTAAGCTTCTCGACTGGAG ATTGTTTTGGCTTGTCAAAACATGTCCTCTTCCTTGAAGGTACCATTGTGTCCCACACAATAGATGATTGAGATGGACCTGTTAGATCACTAGC ATCTGCACTTCCAAGCTGCATACAGCTATCGGAATTGGAGATAGCAGAGCCCGAACTTGATCTATTGCTGGTATCCTCATCAAGTCCCTTAAAA ATGCTTGGGTGGTGGTGGTGGTGGCTAGGAGTAAGCGCACCACCGTCGCCACAGCCAAGCATGCTGCTGCTTCCTCCTAGTACATTTTCAAAGC TGCCTTTTCTCTTTAGTAATTTTGCCTCTTTGTTTTTAAGAGATATTGTTTTCACTTTTGAAACACGACGATCCTCAAACATATCTCGTTCTGA TCTAGATTGAAGAGGGAAGTAGTTAACAAGTGATCCTTTAGTTCTCCAACGAGAACCACACGCGTTGCACAACACAGGCTTGTCCGGAGGCCCA TTTCGCCAAAGGGGGGTACTTGTAACACCACAATGATAGCAAGGTCCTTTCTTTCCCATATCTCAATATAAATATATATATATATATTTTTTTT CCCTTTCTTATAATTTACAATAAAAGATGTAAAAGAACAAATTAACTAATATTTGCAACAACAACAACAACAATAACAAACACTTTTTTTATTT TTTTATT |
Primers for UN38216 SSR
| Primer pair | Forward primer (5'-3') | Reverse primer (5'-3') | Product | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence | Temperature | Size | Sequence | Temperature | Size | Size | Start | End | |
| 1 | TGCACTTCCAAGCTGCATAC | 60.019 | 20 | TTGAGGATCGTCGTGTTTCA | 60.24 | 20 | 263 | 1414 | 1676 |
| 2 | TGCACTTCCAAGCTGCATAC | 60.019 | 20 | TGAGGATCGTCGTGTTTCAA | 60.24 | 20 | 262 | 1414 | 1675 |
| 3 | TAGCAGAGCCCGAACTTGAT | 59.978 | 20 | TTGAGGATCGTCGTGTTTCA | 60.24 | 20 | 225 | 1452 | 1676 |